API for allenaigit/pathwayko
PathwayKO: An R package for knock-out pathway enrichment analysis

Global functions
.apply_GSA Source code
.apply_GSEA Source code
.apply_PADOG Source code
.apply_RONTOTOOLS Source code
.apply_SAFE Source code
.apply_SPIA Source code
.apply_parallel_pathway_analysis Source code
GenerateDEGenes Source code
asNumericTable Source code
checkMethods Source code
combineTables Source code
combineresult Man page Source code
evidenceplot Man page Source code
filtertrue Man page Source code
generateKEGGInfo Source code
generateMechanismGraph Source code
generateROC Source code
getFreeMemoryMB Source code
getTargetPathways Source code
getUserInput Source code
getUserInputBatch Source code
highedges Man page
keggPathwayGraphs Source code
loadToEnvironment Source code
makeSPIAdata Man page Source code
parseKEGGxml Source code
pathwayko Man page Source code
pathwayko_batch Man page Source code
pathwayko_demo Man page Source code
pathwayview Man page Source code
preprocess Man page Source code
rearrangeTable Source code
roctest Man page Source code
saveDEInfo Source code
savePathwayAnalysis Source code
savePathwayInfo Source code
saveResults Source code
violinplot Man page Source code
wilcoxtest Man page Source code
allenaigit/pathwayko documentation built on Nov. 23, 2022, 5:43 p.m.