API for allenaigit/pathwayko
PathwayKO: An R package for knock-out pathway enrichment analysis
| Global functions | |
|---|---|
| .apply_GSA | Source code |
| .apply_GSEA | Source code |
| .apply_PADOG | Source code |
| .apply_RONTOTOOLS | Source code |
| .apply_SAFE | Source code |
| .apply_SPIA | Source code |
| .apply_parallel_pathway_analysis | Source code |
| GenerateDEGenes | Source code |
| asNumericTable | Source code |
| checkMethods | Source code |
| combineTables | Source code |
| combineresult | Man page Source code |
| evidenceplot | Man page Source code |
| filtertrue | Man page Source code |
| generateKEGGInfo | Source code |
| generateMechanismGraph | Source code |
| generateROC | Source code |
| getFreeMemoryMB | Source code |
| getTargetPathways | Source code |
| getUserInput | Source code |
| getUserInputBatch | Source code |
| highedges | Man page |
| keggPathwayGraphs | Source code |
| loadToEnvironment | Source code |
| makeSPIAdata | Man page Source code |
| parseKEGGxml | Source code |
| pathwayko | Man page Source code |
| pathwayko_batch | Man page Source code |
| pathwayko_demo | Man page Source code |
| pathwayview | Man page Source code |
| preprocess | Man page Source code |
| rearrangeTable | Source code |
| roctest | Man page Source code |
| saveDEInfo | Source code |
| savePathwayAnalysis | Source code |
| savePathwayInfo | Source code |
| saveResults | Source code |
| violinplot | Man page Source code |
| wilcoxtest | Man page Source code |
