makeSPIAdata: parsing KEGG xmls ready for pathway enrichment analysis
In allenaigit/pathwayko: PathwayKO: An R package for knock-out pathway enrichment analysis
makeSPIAdata R Documentation
parsing KEGG xmls ready for pathway enrichment analysis
Description
Reference: Tarca A. L. et al. (2009) A novel signaling pathway impact analysis. Bioinformatics, 25, 75–82.
Usage
makeSPIAdata(kgml.path=NULL,organism="mmu",out.path=".")
Arguments
kgml.path
path to KEGG xml files
organism
three letter organism code from KEGG database
out.path
path to which generated RData file will be placed
Value
TRUE on success, FALSE otherwise
Author(s)
Original implementation by Adi Laurentiu Tarca <atarca AT med.wayne.edu>, Purvesh Kathri
<purvesh AT cs.wayne.edu> and Sorin Draghici <sorin AT wayne.edu>, source code shown at the bottom.
Modification by Hannan Ai
allenaigit/pathwayko documentation built on Nov. 23, 2022, 5:43 p.m.
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| makeSPIAdata | R Documentation |
parsing KEGG xmls ready for pathway enrichment analysis
Description
Reference: Tarca A. L. et al. (2009) A novel signaling pathway impact analysis. Bioinformatics, 25, 75–82.
Usage
makeSPIAdata(kgml.path=NULL,organism="mmu",out.path=".")
Arguments
kgml.path |
path to KEGG xml files |
organism |
three letter organism code from KEGG database |
out.path |
path to which generated RData file will be placed |
Value
TRUE on success, FALSE otherwise
Author(s)
Original implementation by Adi Laurentiu Tarca <atarca AT med.wayne.edu>, Purvesh Kathri <purvesh AT cs.wayne.edu> and Sorin Draghici <sorin AT wayne.edu>, source code shown at the bottom. Modification by Hannan Ai
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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