filtertrue: extracting the list of true positive KO KEGG pathways

In allenaigit/pathwayko: PathwayKO: An R package for knock-out pathway enrichment analysis

extracting the list of true positive KO KEGG pathways

Description

It extracts the list of true positive KO KEGG pathways that contain and are impacted by the KO gene from the results of each method

Usage

filtertrue()

Details

This function scans user provided directory for any .csv files under the current directory recursively and reads in all .csv files not tagged with control keywords like "AUC" or "pathway". Hence this function should only be used on directories with no .csv files from other sources. After data input, this function filters out from all PA results entries of true positive KEGG pathways in that analysis and saves each of filtered pathway analysis result in a separate .csv file.

allenaigit/pathwayko documentation built on Nov. 23, 2022, 5:43 p.m.