Files in allenaigit/pathwayko
PathwayKO: An R package for knock-out pathway enrichment analysis
DESCRIPTION
LICENSE
NAMESPACE
R/combineresult.R
R/evidenceplot.R
R/filtertrue.R
R/functions.R
R/highedges.R
R/makeSPIAdata.R
R/methods.R
R/pathwayko.R
R/pathwayview.R
R/preprocess.R
R/roctest.R
R/utilities.R
R/violinplot.R
R/wilcoxtest.R
R/zzz.R
README.md
inst/docs/Users_manual.pdf
inst/docs/pathwayko_0.1.1.pdf
inst/extdata/geodata/GSE146756_preprocess_output/GSE146756_Stk11_RMA_PREP.RData
inst/extdata/geodata/GSE146756_preprocess_output/GSE146756_pData.csv
inst/extdata/geodata/GSE22873_preprocess_output/GSE22873_Myd88_RMA_PREP.RData
inst/extdata/geodata/GSE22873_preprocess_output/GSE22873_pData.csv
inst/extdata/geodata/GSE35160_preprocess_output/GSE35160_Nfe2l2_RMA_PREP.RData
inst/extdata/geodata/GSE35160_preprocess_output/GSE35160_pData.csv
inst/extdata/geodata/GSE39864_preprocess_output/GSE39864_Gata3_RMA_PREP.RData
inst/extdata/geodata/GSE39864_preprocess_output/GSE39864_pData.csv
inst/extdata/geodata/GSE411_400_preprocess_output/GSE411_400_Socs3_RMA_PREP.RData
inst/extdata/geodata/GSE411_400_preprocess_output/GSE411_400_pData.csv
inst/extdata/geodata/GSE6837_preprocess_output/GSE6837_Ikbke_RMA_PREP.RData
inst/extdata/geodata/GSE6837_preprocess_output/GSE6837_pData.csv
inst/extdata/geodata/GSE70302_preprocess_output/GSE70302_Il1a_RMA_PREP.RData
inst/extdata/geodata/GSE70302_preprocess_output/GSE70302_pData.csv
inst/extdata/geodata/GSE8969_preprocess_output/GSE8969_Keap1_RMA_PREP.RData
inst/extdata/geodata/GSE8969_preprocess_output/GSE8969_pData.csv
inst/extdata/geodata/GSE9037_preprocess_output/GSE9037_Irak4_RMA_PREP.RData
inst/extdata/geodata/GSE9037_preprocess_output/GSE9037_pData.csv
inst/extdata/geodata/GSE95806_preprocess_output/GSE95806_Trp53_RMA_PREP.RData
inst/extdata/geodata/GSE95806_preprocess_output/GSE95806_pData.csv
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inst/extdata/mmuSPIA.RData
man/combineresult.Rd
man/evidenceplot.Rd
man/filtertrue.Rd
man/highedges.Rd
man/makeSPIAdata.Rd
man/pathwayko.Rd
man/pathwayko_batch.Rd
man/pathwayko_demo.Rd
man/pathwayview.Rd
man/preprocess.Rd
man/roctest.Rd
man/violinplot.Rd
man/wilcoxtest.Rd
