bait: Extract bait, prey, participant, inhibitor, pubmed,...
In alyst/RpsiXML: R interface to PSI-MI 2.5 files
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
The functions return bait/prey UniProt identifier of the given
psimi25Interaction object.
Usage
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bait(x,...)
prey(x,...)
participant(x,...)
inhibitor(x,...)
pubmedID(x,...)
confidenceValue(x,...)
neutralComponent(x,...)
Arguments
x
An object of psimi25Interaction-class, see
example
...
Other parameters to control the identifier returned, not
implemented yet
Value
The source database identifier is returned.
Author(s)
Jitao David Zhang <jitao_david.zhang@roche.com>, Tony Chiang <tchiang@ebi.ac.uk>
References
The UniProt database http://www.expasy.uniprot.org/
See Also
Examples
1
2
3
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8
xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")
gridxml <- file.path(xmlDir, "biogrid_200804_test.xml")
gridSet <- parsePsimi25Interaction(gridxml, BIOGRID.PSIMI25)
interExp <- interactions(gridSet)[[1]]
bait(interExp)
prey(interExp)
alyst/RpsiXML documentation built on Nov. 21, 2019, 5:47 a.m.
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Description Usage Arguments Value Author(s) References See Also Examples
Description
The functions return bait/prey UniProt identifier of the given
psimi25Interaction object.
Usage
1 2 3 4 5 6 7 | bait(x,...)
prey(x,...)
participant(x,...)
inhibitor(x,...)
pubmedID(x,...)
confidenceValue(x,...)
neutralComponent(x,...)
|
Arguments
x |
An object of |
... |
Other parameters to control the identifier returned, not implemented yet |
Value
The source database identifier is returned.
Author(s)
Jitao David Zhang <jitao_david.zhang@roche.com>, Tony Chiang <tchiang@ebi.ac.uk>
References
The UniProt database http://www.expasy.uniprot.org/
See Also
Examples
1 2 3 4 5 6 7 8 | xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")
gridxml <- file.path(xmlDir, "biogrid_200804_test.xml")
gridSet <- parsePsimi25Interaction(gridxml, BIOGRID.PSIMI25)
interExp <- interactions(gridSet)[[1]]
bait(interExp)
prey(interExp)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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