list2Matrix: Converts list into matrix
In alyst/RpsiXML: R interface to PSI-MI 2.5 files
Description
Usage
Arguments
Value
Author(s)
Description
Converts a named list representation of a graph into matrix
Usage
1
list2Matrix(namedList, type="interaction")
Arguments
namedList
Named list.
type
Character: either interaction or complex
Value
A matrix. A bait-prey matrix if type is "interaction" with baits indexing
the columns and prey the rows or a protein complex incidence graph with
complexes indexing the columns and proteins, the rows.
If type is interaction, the names of the list are the baits and the entries
of the list correspond the prey found by each bait.
If type is complex, the names of the list are the names of the protein complex
and the entries are the members of each corresponding complex.
Author(s)
Tony Chiang <tchiang@ebi.ac.uk>
alyst/RpsiXML documentation built on Nov. 21, 2019, 5:47 a.m.
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Description Usage Arguments Value Author(s)
Description
Converts a named list representation of a graph into matrix
Usage
1 | list2Matrix(namedList, type="interaction")
|
Arguments
namedList |
Named list. |
type |
Character: either interaction or complex |
Value
A matrix. A bait-prey matrix if type is "interaction" with baits indexing the columns and prey the rows or a protein complex incidence graph with complexes indexing the columns and proteins, the rows.
If type is interaction, the names of the list are the baits and the entries of the list correspond the prey found by each bait.
If type is complex, the names of the list are the names of the protein complex and the entries are the members of each corresponding complex.
Author(s)
Tony Chiang <tchiang@ebi.ac.uk>
R Package Documentation
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