psimi25Interactor-class: A class representing interactor from PSI-MI 2.5 XML files

In alyst/RpsiXML: R interface to PSI-MI 2.5 files

Description

A class representing interactor from PSI-MI 2.5 XML files

Slots

sourceDb:

Object of class "character", source database

sourceId:

Object of class "character", ID of the source database

shortLabel:

Object of class "character", short label of the interactor, if not available the slot will be filled with "fullName" node of the file

uniprotId:

Object of class "character", UniProt ID of the interactor

organismName:

Object of class "character", the unique name of the organism name

taxId:

Object of class "character", the NCBI taxonomy ID

xref:

Object of class "environment"

Methods

show

signature(x = "psimi25Interactor"): a print method

sourceDb

signature(x = "psimi25Interactor"): finds out source database

sourceId

signature(x = "psimi25Interactor"): returns ID of the source database

xref

sigature(x = "psimi25Interactor"): returns cross-references of the given interactor

Author(s)

Jitao David Zhang [e-mail]

Examples

showClass("psimi25Interactor")

alyst/RpsiXML documentation built on Nov. 21, 2019, 5:47 a.m.