Description Objects from the Class Slots
An object of class "dagPeptides"
represents the information of peptides.
Objects can be created by calls of the form
new("dagPeptides", data, peptides, upstreamOffset, downstreamOffset, type)
.
data
Object of class "data.frame"
The details of the input sequences.
It includes the columns: IDs, anchorAA (anchor Amino Acid), anchorPos (anchor Position),
peptide (protein peptide), anchor, upstream, downstream (peptides in given upstream and downstream offset from anchor)
peptides
code"matrix" The input peptides. Each column contains one peptide in that position
upstreamOffset
"numeric"
The upstream offset from anchor
downstreamOffset
"numeric"
The downstream offset from anchor
type
"charactger"
ID type of inputs
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