testDAUresults: Class '"testDAUresults"'

In alyst/dagLogo: dagLogo

Description

An object of class "testDAUresults" represents background model.

Objects from the Class

Objects can be created by calls of the form new("dagBackground", group="character", difference="matrix", zscore="matrix", pvalue="matrix", background="matrix", motif="matrix", upstream="numeric", downstream="numeric").

Slots

group

Object of class "character" could be "null", "classic", "charge", "chemistry", "hydrophobicity"

difference

code"matrix" the difference of inputs from background for each amino acid in each position

zscore

code"matrix" z score for each amino acid in each position

pvalue

code"matrix" pvalue for each amino acid in each position

background

code"matrix" background frequencies for each amino acid in each position

motif

code"matrix" inputs frequencies for each amino acid in each position

upstream

"numeric" The upstream offset from anchor

downstream

"numeric" The downstream offset from anchor

alyst/dagLogo documentation built on May 12, 2019, 2:32 a.m.