dagLogo: plot sequence logo for test results
In alyst/dagLogo: dagLogo

Description Usage Arguments Value Author(s) See Also Examples

plot sequence logo for test results

dagLogo(testDAUresults, type=c("diff", "zscore"), pvalueCutoff=0.05, namehash=NULL,
                    font="Helvetica-Bold", textgp=gpar(), legend=FALSE, 
                    labelRelativeToAnchor=FALSE,
                    labels=NULL)

`testDAUresults`	output of `testDAU`, should be an object of testDAUresults
`type`	"diff" or "zscore"
`pvalueCutoff`	pvalue cutoff for logo plot
`namehash`	the hash table to convert rownames of test results to a single letter to be plotted in the logo
`font`	font for logo symbol
`textgp`	text parameter
`legend`	plot legend or not, default false.
`labelRelativeToAnchor`	plot label relative to anchor or not, default false.
`labels`	the labels in each position.

none

Jianhong Ou

nameHash

    data("seq.example")
    data("proteome.example")
    bg <- buildBackgroundModel(seq.example, proteome=proteome.example, permutationSize=10)
    t <- testDAU(seq.example, bg)
    dagLogo(t)