ecoli.proteome: the subset proteome of Escherichia coli
In alyst/dagLogo: dagLogo
Description
Usage
Format
Details
Examples
Description
the subset proteome of Escherichia coli
Usage
1
Format
An object of Proteome for Escherichia coli proteome.
The format is: A list with one data frame and an character.
proteome'data.frame': obs. of 4 variables
type'character': "UniProt"
The format of proteome is
ENTREZ_GENEa character vector, records entrez gene id
SEQUENCEa character vector, peptide sequences
IDa character vector, Uniprot ID
LENa character vector, length of peptides
Details
used in the examples
Annotation data obtained by:
library(UniProt.ws)
taxId(UniProt.ws) <- 562
proteome <- prepareProteome(UniProt.ws, species="Escherichia coli")
Examples
1
2
3
data(ecoli.proteome)
head(ecoli.proteome@proteome)
ecoli.proteome@type
alyst/dagLogo documentation built on May 12, 2019, 2:32 a.m.
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Description Usage Format Details Examples
Description
the subset proteome of Escherichia coli
Usage
1 |
Format
An object of Proteome for Escherichia coli proteome. The format is: A list with one data frame and an character.
proteome'data.frame': obs. of 4 variables
type'character': "UniProt"
The format of proteome is
ENTREZ_GENEa character vector, records entrez gene id
SEQUENCEa character vector, peptide sequences
IDa character vector, Uniprot ID
LENa character vector, length of peptides
Details
used in the examples Annotation data obtained by: library(UniProt.ws) taxId(UniProt.ws) <- 562 proteome <- prepareProteome(UniProt.ws, species="Escherichia coli")
Examples
1 2 3 | data(ecoli.proteome)
head(ecoli.proteome@proteome)
ecoli.proteome@type
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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