prepareProteome: prepare proteome for background building
In alyst/dagLogo: dagLogo
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
prepare proteome from UniProt webserver or a fasta file
Usage
1
prepareProteome(UniProt.ws, fasta, species="unknown")
Arguments
UniProt.ws
an object of UniProt.ws
fasta
fasta file name or an object of AAStringSet
species
an character to assign the species of the proteome
Value
an object of Proteome which contain protein sequence information
Author(s)
Jianhong Ou
See Also
formatSequence, buildBackgroundModel
Examples
1
2
3
4
5
if(interactive()){
library(UniProt.ws)
taxId(UniProt.ws) <- 7227
proteome <- prepareProteome(UniProt.ws, species="Drosophila melanogaster")
}
alyst/dagLogo documentation built on May 12, 2019, 2:32 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
prepare proteome from UniProt webserver or a fasta file
Usage
1 | prepareProteome(UniProt.ws, fasta, species="unknown")
|
Arguments
UniProt.ws |
an object of UniProt.ws |
fasta |
fasta file name or an object of AAStringSet |
species |
an character to assign the species of the proteome |
Value
an object of Proteome which contain protein sequence information
Author(s)
Jianhong Ou
See Also
formatSequence, buildBackgroundModel
Examples
1 2 3 4 5 | if(interactive()){
library(UniProt.ws)
taxId(UniProt.ws) <- 7227
proteome <- prepareProteome(UniProt.ws, species="Drosophila melanogaster")
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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