Man pages for alzel/proteomicsQC
A set of Routines to plot and analyse DIA-NN reports
| countInGolden | Counts features from DIA-NN report e.g. Precursor.Id in... |
| countStats | Counts Z-score stats of precursors |
| create_metadata | Creates metadata from DIA-NN report |
| getPrevalence | Counts prevalence of features (e.g. Precursor.Id) from DIA-NN... |
| lappend | Append List |
| plotExperiment | Plots Experiment |
| plotFeatureCounts | Plots feature counts |
| plotGoldenCounts | Plots combined DIA-NN experiment with Golden standarts... |
| plotMissingness | Plots missingness matrix |
| plotPrecursors | Plots features (e.g. Precursor.Id) across entire batch run |
| plotStats | Plots outliers for Total Ion Count (TIC) and number of... |
| removeTrend | Removes trend from a batch of DIA-NN experiment |
| save_object | Saves RData object |
