getPrevalence: Counts prevalence of features (e.g. Precursor.Id) from DIA-NN...

In alzel/proteomicsQC: A set of Routines to plot and analyse DIA-NN reports

Counts prevalence of features (e.g. Precursor.Id) from DIA-NN report

Description

Counts prevalence of features (e.g. Precursor.Id) from DIA-NN report

Usage

getPrevalence(report, Q_THR = 0.01, feature_var = "Precursor.Id")

Arguments

report	DIA-NN report file
feature_var	a single feature such as Precursor.Id
Q_THR	Q-value filtering threshold, default: 0.01

Value

df with feature prevalence values

Examples

Precursor.Id_prevalence <- getPrevalence(diann_report, feature_var = "Precursor.Id")

alzel/proteomicsQC documentation built on Aug. 11, 2022, 5:58 p.m.