plotStats: Plots outliers for Total Ion Count (TIC) and number of...

In alzel/proteomicsQC: A set of Routines to plot and analyse DIA-NN reports

Plots outliers for Total Ion Count (TIC) and number of features

Description

Plots outliers for Total Ion Count (TIC) and number of features

Usage

plotStats(report_stats, Z_THR = 3, stats = c("Zn", "ZTIC", "Zmodn", "ZmodTIC"))

Arguments

report_stats	TIC and n stats, output from countStats
Z_THR	Z-score filtering threshold, default: 3
stats	list of stats to plot, e.g. c("Zn", "ZTIC", "Zmodn", "ZmodTIC")

Value

a list of plots of length 2

Examples

report_stats <- countStats(diann_report)
plots <- plotStats(report_stats, Z_THR = 3, stats = c("Zmodn", "ZTIC", "ZmodTIC"))
plots[[1]]/plots[[2]]

alzel/proteomicsQC documentation built on Aug. 11, 2022, 5:58 p.m.