plotFeatureCounts: Plots feature counts

In alzel/proteomicsQC: A set of Routines to plot and analyse DIA-NN reports

Plots feature counts

Description

Plots feature counts

Usage

plotFeatureCounts(
  report,
  metadata,
  Q_THR = 0.01,
  run_order_var = "run_order",
  features = c("Protein.Group", "Protein.Ids", "Precursor.Id")
)

Arguments

metadata	experiment description to arrange by run_order output from create_metadata
run_order_var	variable for sample running order
report	DIA-NN report file
Q_THR	Q-value filtering threshold (Default)
features	list of features to plot, e.g. c("Protein.Group", "Protein.Ids", "Precursor.Id")

Examples

plotFeatureCounts(diann_report, Q_THR = 0.01, features = c("Protein.Ids", "Precursor.Id"))

alzel/proteomicsQC documentation built on Aug. 11, 2022, 5:58 p.m.