create_metadata: Creates metadata from DIA-NN report

In alzel/proteomicsQC: A set of Routines to plot and analyse DIA-NN reports

Creates metadata from DIA-NN report

Description

Creates metadata from DIA-NN report

Usage

create_metadata(
  report,
  INTO = c("Batch", "sample_id", "run_order", "plate_pos", "well"),
  file_pattern = "(.*?)_(.*?)_([0-9]+)_([0-9]+)_([A-Za-z0-9]+)\\.wiff\\.dia$"
)

Arguments

report	DIA-NN report file
INTO	extracted columns in metadata output file, e.g. c("Batch", "sample_id", "run_order", "plate_pos", "well")
file_pattern	regular expression for extracting experimental metadata, e.g. "(.*?)_(.*?)_([0-9]+)_([0-9]+)_([A-Za-z0-9]+)\\.wiff\\.dia$"

Value

returns metadata tibble

Examples

create_metadata(diann_report,
                INTO = c("Batch", "sample_id", "run_order", "plate_pos",  "well"),
                file_pattern = "(.*?)_(.*?)_([0-9]+)_([0-9]+)_([A-Za-z0-9]+)\\.wiff\\.dia$")

alzel/proteomicsQC documentation built on Aug. 11, 2022, 5:58 p.m.