convert_to_aa: Convert from DNA to amino acid sequence
In amandamok/choros: Bias Correction for Ribosome Profiling Data
convert_to_aa R Documentation
Convert from DNA to amino acid sequence
Description
This function extracts CDS sequence from a FASTA-formatted file,
translates DNA into amino acid sequence, and writes amino acid sequences to disk.
Usage
convert_to_aa(transcript_fa_fname, transcript_length_fname, output_fname)
Arguments
transcript_fa_fname
character; file path to transcriptome .fasta (DNA) file
transcript_length_fname
character; file path to transcriptome lengths file
output_fname
character; file path for output amino acid sequences
amandamok/choros documentation built on March 15, 2023, 7:57 p.m.
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| convert_to_aa | R Documentation |
Convert from DNA to amino acid sequence
Description
This function extracts CDS sequence from a FASTA-formatted file, translates DNA into amino acid sequence, and writes amino acid sequences to disk.
Usage
convert_to_aa(transcript_fa_fname, transcript_length_fname, output_fname)
Arguments
transcript_fa_fname |
character; file path to transcriptome .fasta (DNA) file |
transcript_length_fname |
character; file path to transcriptome lengths file |
output_fname |
character; file path for output amino acid sequences |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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