plot_bias: Plot RPF biases

In amandamok/choros: Bias Correction for Ribosome Profiling Data

Plot RPF biases

Description

This function generates 'iXnos'-style plot of codon or nucleotide positional contributions to RPF counts.

Usage

plot_bias(
  model_metric,
  plot_title = "",
  plot_subtitle = "",
  type = "codon",
  metric = "corr",
  fill_colors = NULL
)

Arguments

model_metric	numeric vector; output from 'evaluate_bias'
plot_title	character; title for plot
plot_subtitle	character; subtitle for plot
type	character; one of 'codon' or 'nt' corresponding to 'model_metric'
metric	character; one of 'corr' or 'norm'
fill_colors	named character vector; colors corresponding to positions

Value

A ggplot object

amandamok/choros documentation built on March 15, 2023, 7:57 p.m.