calculate_transcript_density | R Documentation |
This function computes the mean or median footprint density per codon across all transcripts.
calculate_transcript_density( bam_dat, transcript_length_fname, statistic = mean, exclude_codons5 = 10, exclude_codons3 = 10 )
bam_dat |
data frame; output from 'load_bam' |
transcript_length_fname |
character; file path to transcriptome lengths file |
statistic |
character; one of 'mean' or 'median' |
exclude_codons5 |
integer; number of codons to exclude from 5' end of transcript |
exclude_codons3 |
integer; number of codons to exclude from 3' end of transcript |
A numeric vector of RPF density per transcript
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