get_codons: Retrieve codons in A-, P-, and E-site positions
In amandamok/choros: Bias Correction for Ribosome Profiling Data
get_codons R Documentation
Retrieve codons in A-, P-, and E-site positions
Description
A function to pull codons in the A-, P-, and E-site positions of a ribosome
at a position within a transcript.
Usage
get_codons(transcript_name, cod_idx, utr5_length, transcript_seq)
Arguments
transcript_name
character; one of 'names(transcript_seq)'
cod_idx
integer; codon index for A-site codon (1-based)
utr5_length
integer; length of 5' UTR (in nucleotides)
transcript_seq
named character vector; transcript (+ 5' and 3' UTR regions) sequences
Value
A named character vector
amandamok/choros documentation built on March 15, 2023, 7:57 p.m.
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| get_codons | R Documentation |
Retrieve codons in A-, P-, and E-site positions
Description
A function to pull codons in the A-, P-, and E-site positions of a ribosome at a position within a transcript.
Usage
get_codons(transcript_name, cod_idx, utr5_length, transcript_seq)
Arguments
transcript_name |
character; one of 'names(transcript_seq)' |
cod_idx |
integer; codon index for A-site codon (1-based) |
utr5_length |
integer; length of 5' UTR (in nucleotides) |
transcript_seq |
named character vector; transcript (+ 5' and 3' UTR regions) sequences |
Value
A named character vector
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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