pivot_FindAllMarkers_wider: pivot_FindAllMarkers_wider

In amyh25/Rsc: Single Cell Helper Functions

pivot_FindAllMarkers_wider

Description

Takes output of FindAllMarkers, filters down to significant genes, then builds a wide table of top markers for each ident specified

Usage

pivot_FindAllMarkers_wider(
  markers,
  pval = p_val_adj,
  pval_thresh = 0.05,
  log2FC = avg_log2FC,
  ident = cluster
)

Arguments

markers	Seurat object
pval	pval var (default: p_val_adj)
pval_thresh	p value filtering threshold (default: 0.05)
log2FC	log2 fold change var (default: avg_log2FC)
ident	identity var (default: cluster)

Value

tibble of top markers per ident, all genes meeting p-value threshold, ordered by top log2FC

amyh25/Rsc documentation built on Jan. 29, 2024, 7:22 a.m.