run_monocle_trajectory: run_monocle_trajectory
In amyh25/Rsc: Single Cell Helper Functions
View source: R/monocle_wrappers.R
run_monocle_trajectory R Documentation
run_monocle_trajectory
Description
Wrapper for the monocle pipeline:
so %>% as.cell_data_set() %>% cluster_cells() %>% learn_graph() %>% order_cells()
Usage
run_monocle_trajectory(
so,
reduction_method = "UMAP",
use_partition = FALSE,
close_loop = FALSE
)
Arguments
so
seurat object
Value
cell data set object
amyh25/Rsc documentation built on Jan. 29, 2024, 7:22 a.m.
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View source: R/monocle_wrappers.R
| run_monocle_trajectory | R Documentation |
run_monocle_trajectory
Description
Wrapper for the monocle pipeline: so %>% as.cell_data_set() %>% cluster_cells() %>% learn_graph() %>% order_cells()
Usage
run_monocle_trajectory(
so,
reduction_method = "UMAP",
use_partition = FALSE,
close_loop = FALSE
)
Arguments
so |
seurat object |
Value
cell data set object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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