plot_binary_on_umap: plot_binary_on_umap
In amyh25/Rsc: Single Cell Helper Functions

plot_binary_on_umap

R Documentation

plot_binary_on_umap

Description

Plots a binary variable on UMAP

Usage

plot_binary_on_umap(
  metadata_df,
  binary_var,
  grouping_strs = NA,
  umap1 = "UMAP_1",
  umap2 = "UMAP_2",
  color_str = "red",
  pt_size = 0.5,
  pt_stroke = 0.1,
  pt_alpha = 0.5,
  x_pos = NA,
  y_pos = NA
)

Arguments

`metadata_df`	data frame with umap coordinates and binary variable
`binary_var`	binary variable, must be TRUE/FALSE
`grouping_strs`
`umap1`	string denoting UMAP_1 (optional; default: UMAP_1)
`umap2`	string denoting UMAP_2 (optional; default: UMAP_2)
`color_str`	string denoting the color of detected cells (default: red)
`pt_size`	size of points in geom_point (default: 0.5)
`pt_stroke`	stroke of points in geom_point (default: 0.1)
`pt_alpha`	transparency of points in geom_point (default: 0.5)
`x_pos`	x position of count text (default: NA, sets to xmax)
`y_pos`	y position of count text (default: NA, sets to ymax)