plot_gene_str: plot_gene_str

In amyh25/Rsc: Single Cell Helper Functions

plot_gene_str

Description

Plots genes, with points ordered by expression of gene value

Usage

plot_gene_str(
  gene_str,
  genes_df,
  umap_coords,
  join_col_str = "cell",
  UMAP_1 = "UMAP_1",
  UMAP_2 = "UMAP_2",
  stroke_size = 0.1,
  pt_size = 0.5
)

Arguments

gene_str	gene name, as string
genes_df	data frame with at least two columns, one with gene values and one with obs IDs to join to umap_coords
umap_coords	data frame with at least three columns, two with UMAP coords and one with obs IDs to join to genes_df
UMAP_1	string denoting UMAP_1 (optional; default: UMAP_1)
UMAP_2	string denoting UMAP_2 (optional; default: UMAP_2)
stroke_size	stroke size (optional; default: 0.1)
pt_size	point size (optional; default: 0.5)

Value

a ggplot object

amyh25/Rsc documentation built on Jan. 29, 2024, 7:22 a.m.