bin_boundaries | Determine bin boundaries |
bin_counts | make bin count files |
cbs.segment_all | Generate the segmented profile for each cell. |
cbs.segment_one | Segment the normalzied bin count profile for individual cell... |
dropareas | centromere areas annotation |
example1.varbin.20k | example1.varbin.20k |
fdr_fisherPV | Compute FDRs for Fisher's test p-values. |
find_clone | Identify clones in hierarchical tree. |
findpins | Select features and generate the incidence table. |
findsmears | Generate the smear tables. |
find_subclone | Identify subclones in hierarchical tree. |
gc_one | GC normalization. |
hclust_tree | Build the hierarchical clustering tree. |
hg19.chrom.sizes | hg19.chrom.sizes |
hg19.varbin.gc.20k | hg19.varbin.gc.20k |
hg19.varbin.gc.50k | hg19.varbin.gc.50k |
hg19.varbin.gc.5k | hg19.varbin.gc.5k |
output_viewer | Generate files for the downstream visualization using viewer. |
preprocess_segfile | Preprocess the segmented copy number profiles |
simFisher_parallel | Simulate the Fisher's test p-values. |
varbinGC | Compute GC content. |
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