varbinGC: Compute GC content.
In ananjysong/SCclust: Single Cell Copy Number Analysis and Clustering
varbinGC R Documentation
Compute GC content.
Description
Given the bin boundaries, compute the GC content in each bin.
Usage
varbinGC(chromFa_dir, data_dir, Nk = "5k")
Arguments
chromFa_dir
File directory that contains the reference genome.
data_dir
File directory. The directory that contains the files of mappable regions, bin boundaries etc.
The GC content file (varbin.gc.content.Nk.txt) will also be output to this directory.
Nk
Default value: 5k. It denotes the number of bins. 5000 = 5k, 10000 = 10k, ...
ananjysong/SCclust documentation built on April 18, 2022, 10:06 p.m.
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| varbinGC | R Documentation |
Compute GC content.
Description
Given the bin boundaries, compute the GC content in each bin.
Usage
varbinGC(chromFa_dir, data_dir, Nk = "5k")
Arguments
chromFa_dir |
File directory that contains the reference genome. |
data_dir |
File directory. The directory that contains the files of mappable regions, bin boundaries etc. The GC content file (varbin.gc.content.Nk.txt) will also be output to this directory. |
Nk |
Default value: 5k. It denotes the number of bins. 5000 = 5k, 10000 = 10k, ... |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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