output_viewer | R Documentation |
Generate files for the downstream visualization using viewer.
output_viewer(output_file_dir, seg.quantal, ratio.quantal, pins, pinmat, mat_dist, hc_clone, sub_hc_clone, subcloneTooBig = 0.8, smear = 2, study)
output_file_dir |
The directory made to save the output files for the viewer. |
seg.quantal |
The seg.quantal profiles. |
ratio.quantal |
The ratio.quantal profiles |
pins |
The pins. |
pinmat |
The pinmat. |
mat_dist |
The dissmilarity based on Fisher's test p-values for hierarchical clustering. |
hc_clone |
The hc object with clones identified. |
sub_hc_clone |
The list of hc objects in clones with subclones identified. |
subcloneTooBig |
Default: 0.8 |
smear |
The smear parameter. Default value: 2 |
study |
The name of your study. |
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