Files in andreaskapou/BPRMeth

Model higher-order methylation profiles

R/BPRMeth_package.R R/RcppExports.R R/basis_functions.R R/cluster_profiles_mle.R R/cluster_profiles_vb.R R/data.R R/deprecated_functions.R R/deprecated_process_functions.R R/design_matrix.R R/infer_profiles_gibbs.R R/infer_profiles_mle.R R/infer_profiles_vb.R R/model_log_likelihood.R R/plotting_functions.R R/predict_expr.R R/process_data.R R/utils.R README.md data-raw/create_encode_data.R data-raw/create_synth_data.R man/BPRMeth.Rd man/bernoulli_data.Rd man/beta_data.Rd man/binomial_data.Rd man/boxplot_cluster_expr.Rd man/bpr_cluster_wrap.Rd man/bpr_optimize.Rd man/bpr_predict_wrap.Rd man/cluster_profiles_mle.Rd man/cluster_profiles_vb.Rd man/create_anno_region.Rd man/create_basis.Rd man/create_region_object.Rd man/design_matrix.Rd man/encode_expr.Rd man/encode_met.Rd man/eval_functions.Rd man/gaussian_data.Rd man/gex_data.Rd man/impute_bulk_met.Rd man/infer_profiles_gibbs.Rd man/infer_profiles_mle.Rd man/infer_profiles_vb.Rd man/inner_predict_model_expr.Rd man/inner_train_model_expr.Rd man/meth_data.Rd man/model_log_likelihood.Rd man/old_boxplot_cluster_gex.Rd man/old_plot_cluster_prof.Rd man/old_plot_fitted_profiles.Rd man/partition_bulk_dataset.Rd man/plot_cluster_profiles.Rd man/plot_infer_profiles.Rd man/plot_predicted_expr.Rd man/pool_bs_seq_rep.Rd man/predict_expr.Rd man/preprocess_bs_seq.Rd man/preprocess_final_HTS_data.Rd man/process_haib_caltech_wrap.Rd man/read_anno.Rd man/read_bs_encode_haib.Rd man/read_chrom_size.Rd man/read_expr.Rd man/read_met.Rd man/read_rna_encode_caltech.Rd tests/testthat.R tests/testthat/test-basis.R tests/testthat/test-design_matrix.R tests/testthat/test-eval_function.R tests/testthat/test-likelihoods.R tests/testthat/test-utils.R vignettes/BPRMeth_vignette.R vignettes/BPRMeth_vignette.Rmd