API for andreaskapou/SeuratPipe
Packaging common Seurat analysis tasks
| Global functions | |
|---|---|
| .as_factor_metadata | Source code |
| .drop_factors | Source code |
| .get_density | Source code |
| .get_metadata | Source code |
| .internal_col_pal | Source code |
| .onLoad | Source code |
| .plot_dims | Source code |
| .spatial_plot_dims | Source code |
| SeuratPipe | Man page |
| add_umap_embedding | Man page Source code |
| cluster_analysis | Man page Source code |
| compute_module_score | Man page Source code |
| create_seurat_object | Man page Source code |
| dim_plot | Man page Source code |
| dim_plot_tailored | Man page Source code |
| dimred_qc_plots | Man page Source code |
| dot_plot | Man page Source code |
| feature_plot | Man page Source code |
| feature_plot_tailored | Man page Source code |
| find_all_markers | Man page Source code |
| find_clusters | Man page Source code |
| find_neighbors | Man page Source code |
| harmony_analysis | Man page Source code |
| heatmap_plot | Man page Source code |
| install_scrublet | Man page Source code |
| lognormalize_and_pca | Man page Source code |
| lognormalize_and_pca.Seurat | Man page Source code |
| lognormalize_and_pca.default | Source code |
| lognormalize_and_pca.list | Man page Source code |
| module_score_analysis | Man page Source code |
| pca_feature_cor_plot | Man page Source code |
| qc_filter_seurat_object | Man page Source code |
| qc_filter_seurat_object.Seurat | Man page Source code |
| qc_filter_seurat_object.default | Source code |
| qc_filter_seurat_object.list | Man page Source code |
| run_cluster_pipeline | Man page Source code |
| run_harmony | Man page Source code |
| run_harmony_pipeline | Man page Source code |
| run_qc_pipeline | Man page Source code |
| run_spatial_qc_pipeline | Man page Source code |
| run_umap | Man page Source code |
| scatter_meta_plot | Man page Source code |
| spatial_create_seurat_object | Man page Source code |
| spatial_dim_plot | Man page Source code |
| spatial_feature_plot | Man page Source code |
| subset_dim_plot | Man page Source code |
| subset_feature_plot | Man page Source code |
