dot_plot: Tailored dot plot

In andreaskapou/SeuratPipe: Packaging common Seurat analysis tasks

Tailored dot plot

Description

This function adapts the DotPlot Seurat function by providing additional plotting options.

Usage

dot_plot(
  seu,
  features,
  group.by = NULL,
  labels = NULL,
  xlab = "Signature",
  ylab = "Cluster",
  legend.position = "right",
  col_pal = NULL,
  ...
)

Arguments

seu	Seurat object (required).
features	Vector of features to plot.
group.by	Name of metadata column to group cells by (required).
labels	If we want to have different labels plotted for each feature.
xlab	Label for x-axis.
ylab	Label for y-axis.
legend.position	Position of legend, default "right" (set to "none" for clean plot).
col_pal	Continuous colour palette to use, default "RdYlBu".
...	Additional parameters passed to Seurat's DotPlot.

Value

A ggplot2 object.

Author(s)

C.A.Kapourani [e-mail]

andreaskapou/SeuratPipe documentation built on Nov. 22, 2022, 4:16 p.m.