add_umap_embedding: Add UMAP embedding in Seurat object
In andreaskapou/SeuratPipe: Packaging common Seurat analysis tasks
add_umap_embedding R Documentation
Add UMAP embedding in Seurat object
Description
Add UMAP embedding in existing Seurat object. This is the case when running
the pipeline and then you want to attach the stored UMAP embedding, stored
as CSV file, instead of recomputing the UMAP.
Usage
add_umap_embedding(seu, embedding)
Arguments
seu
Seurat object
embedding
UMAP embedding. If a character, the function will assume a
filename is given and will read the corresponding UMAP embedding. Otherwise,
it assumes a UMAP embedding matrix is provided as input containing only the
embeddings as columns.
andreaskapou/SeuratPipe documentation built on Nov. 22, 2022, 4:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| add_umap_embedding | R Documentation |
Add UMAP embedding in Seurat object
Description
Add UMAP embedding in existing Seurat object. This is the case when running the pipeline and then you want to attach the stored UMAP embedding, stored as CSV file, instead of recomputing the UMAP.
Usage
add_umap_embedding(seu, embedding)
Arguments
seu |
Seurat object |
embedding |
UMAP embedding. If a character, the function will assume a filename is given and will read the corresponding UMAP embedding. Otherwise, it assumes a UMAP embedding matrix is provided as input containing only the embeddings as columns. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.