install_scrublet: Install Scrublet Python Package

In andreaskapou/SeuratPipe: Packaging common Seurat analysis tasks

Install Scrublet Python Package

Description

Install Scrublet Python package into a virtualenv or conda env.

Usage

install_scrublet(
  envname = "r-reticulate",
  method = "auto",
  conda = "auto",
  pip = TRUE,
  ...
)

Arguments

envname	Name of environment to install packages into
method	Installation method. By default, "auto" automatically finds a method that will work in the local environment. Change the default to force a specific installation method. Note that the "virtualenv" method is not available on Windows.
conda	Path to conda executable (or "auto" to find conda using the PATH and other conventional install locations).
pip	Install from pip, if possible.
...	Additional arguments passed to conda_install() or virtualenv_install().

Details

On Linux and OS X the "virtualenv" method will be used by default ("conda" will be used if virtualenv isn't available). On Windows, the "conda" method is always used.

andreaskapou/SeuratPipe documentation built on Nov. 22, 2022, 4:16 p.m.