dim_plot_tailored: Tailored dim plot

In andreaskapou/SeuratPipe: Packaging common Seurat analysis tasks

Tailored dim plot

Description

This function generates the same plot as dim_plot, although it focuses on a single group and generates slightly better looking plot.

Usage

dim_plot_tailored(
  seu,
  group.by,
  reduction = "umap",
  legend.position = "right",
  col_pal = NULL,
  label = FALSE,
  label.size = 7,
  pt.size = 1.4,
  pt.shape = 21,
  pt.stroke = 0.05,
  pt.alpha = 1,
  dims_plot = c(1, 2),
  ...
)

Arguments

seu	Seurat object
group.by	Name of metadata column to group (color) cells by (required).
reduction	Dimensionality reduction to use.
legend.position	Position of legend, default "right" (set to "none" for clean plot).
col_pal	Continuous colour palette to use, default "RdYlBu".
label	Whether to label the groups in 'reduction' space.
label.size	Sets size of labels.
pt.size	Adjust point size for plotting.
pt.shape	Adjust point shape for plotting.
pt.stroke	Stroke value for each point.
pt.alpha	Adjust alpha value for each point.
dims_plot	Dimensions to plot, must be a two-length numeric vector specifying x- and y-dimensions.
...	Additional parameters passed to ggplot2::geom_point.

Value

A ggplot2 object.

Author(s)

C.A.Kapourani [e-mail]

andreaskapou/SeuratPipe documentation built on Nov. 22, 2022, 4:16 p.m.