| binData | Construct bins either double in size or are of equal width,... |
| bins_assignment_plot | Demonstration of how binned body-mass values get assigned to... |
| calcLike | Calculate maximum likelihood estimate and 95\ interval |
| calcLikeSegments | Calculate MLEs and 95\ of a data set |
| confPlot | Plot confidence intervals of repeated estimates for one... |
| dataBin | The 'IBTS_data' amended with explicit length and body mass... |
| dataOrig | Original IBTS dataset downloaded from DATRAS website |
| Distributions | Bounded and unbounded power-law distributions |
| eightMethods | Compute size-spectra exponents for a dataset using all eight... |
| eightMethods.count | Compute exponents for the IBTS dataset using all eight... |
| eightMethodsMEE | Use all eight methods to fit a simple vector of body masses... |
| eight.methods.plot | Plotting fits of eight methods for a single data set (MEE... |
| eight.results.default | Results of fitting 10,000 data sets using eight methods (MEE... |
| eval.string.dplyr | Internal function used by s_filter, s_select etc. |
| f | Format x to have the specified number of decimal places |
| fullResults | Full results from using each fitting method on each year of... |
| gap.barplot.cust | Customising 'plotrix::gap.barplot' for a histogram with a gap... |
| histAxes | Histogram axes for figures as in Figure 3 of MEE paper |
| histAxes2 | Do histogram axes for Figure - not used, but may need to... |
| IBTS_data | The IBTS data after some processing as in vignette... |
| ISD_bin_plot | Recommended plots of individual size distribution and fit for... |
| ISD_bin_plot_nonoverlapping | Recommended plots of individual size distribution and fit for... |
| is.wholenumber | Tests if each value in a vector is a whole number |
| LBmizbinsFun | Calculate the bin breaks for the LBmiz method |
| LBN_bin_plot | Biomass size spectrum plot for binned data demonstrating... |
| LBNbiom.method | Fit biomass size spectrum with the LBNbiom and LBbiom methods |
| LBNbiom.method.counts | Use the LBN and LB methods to calculate the slope of the... |
| legJust | Add legend with right-justification |
| lengthToMass | Convert a vector of body lengths to a vector of body masses... |
| length_weight_plot | Example length-weight relationships for two species,... |
| Llin.method | Fit size spectrum using Llin method |
| Llin.method.counts | The Llin method for count data The Llin method, which is... |
| lm.line | Plot bounded straight line of results of 'lm()' fit |
| log2bins | Construct bins that double in size and encompass the data, |
| logTicks | Add axes and tick marks to a log-log plot to represent... |
| massToLength | Convert a vector of body masses to a vector of body lengths... |
| MLEbin.MEPS.cutoff16 | Simulation results of multiple data sets (with $x_min=1$ but... |
| MLEbin.MEPS.default | Default simulation results of multiple data sets binned using... |
| MLEbin.MEPS.xmin16 | Simulation results of multiple data sets (with $x_min=16$)... |
| MLEbin.simulate | Simulate, bin and fit data using four different binning... |
| MLEbins.res | Results from using MLEbins method on each year of IBTS data... |
| MLEmid.MLEbin.conf | One figure with eight confidence interval plots for each of... |
| MLEmid.MLEbin.hist | One figure with eight histograms for each of MLEmid and... |
| MLEmid.MLEbin.table | Make dataframe of results from MLEmid and MLEbin methods and... |
| MLE.plot | Recommended single plot of ISD and MLE results |
| MLE.plots.recommend | Recommended LBN-type plot with ISD for fitted MLE (MEE Figure... |
| negLL.PLB | Calculate negative log-likelihood for the bounded power-law... |
| negLL.PLB.binned | Calculate negative log-likelihood for the bounded power-law... |
| negLL.PLB.binned.species | Calculate the negative log-likelihood of 'b' for the PLB... |
| negLL.PLB.bins.species | Calculate the negative log-likelihood of 'b' for the PLB... |
| negLL.PLB.counts | Calculate negative log-likelihood for the bounded power-law... |
| pBiomass | Biomass distribution function from MEE equations A.4 and A.8 |
| pBiomassBins | Total and normalised biomass in each bin for a fitted... |
| pBiomassBinsConfs | Wrapper to call 'pBiomassBins()' for three values of b (MLE... |
| plot_binned_fitted | Add horizontal bars and shaded rectangles to 'LBN_bin_plot()' |
| profLike | Profile log-likelihood method to calculate 95\... |
| qqtab | Produce row for a dataframe, LaTeX or Rmarkdown table code... |
| specCodeNames | Species codes and their scientific names |
| species_bins_plots | Plot the species-specific bins for all species, as in Figures... |
| s_select | Modified version of dplyr's select that uses string arguments |
| timeSerPlot | Plot time series of estimated _b_ with confidence intervals |
| timeSerPlot.eight | Call 'timeSerPlot()' eight times to create MEPS Figure 1,... |
| totalBiomass | Calculate the total biomass for given parameter values for... |
