Files in andrew-hipp/RADami
Phylogenetic Analysis of RADseq Data
DESCRIPTION
NAMESPACE
R/compare.all.trees.R
R/consensus.pyRAD.R
R/filter.by.R
R/gen.RAD.loci.datasets.R
R/genTrees.R
R/genotypes.pyRAD.loci.R
R/get.raxml.siteLikelihoods.R
R/get.raxml.treeLikelihoods.R
R/grab.pyRAD.locus.R
R/group.subset.pyRAD.loci.R
R/lengths.report.R
R/locus.dist.R
R/match.lnL.to.trees.R
R/overlap.report.R
R/pairwise.fst.R
R/plot.locus.dist.R
R/plot.partitionedRAD.R
R/plot.rankedPartitionedRAD.R
R/print.pyRAD.loci.R
R/rad2mat.R
R/rad2nex.R
R/rad2phy.R
R/rank.partitionedRAD.R
R/read.pyRAD.R
R/rtreePhylo.R
R/subset.pyRAD.loci.R
R/summary.pyRAD.loci.R
R/tidyName.R
R/unique.multiPhylo.R
R/write.DNAStringSet.R
README.md
data/oak.rads.rda
data/oak.tree.rda
inst/VERSIONS
man/RADami-package.Rd
man/compare.all.trees.Rd
man/consensus.pyRAD.Rd
man/filter.by.Rd
man/gen.RAD.loci.datasets.Rd
man/genTrees.Rd
man/genotypes.pyRAD.loci.Rd
man/get.raxml.siteLikelihoods.Rd
man/get.raxml.treeLikelihoods.Rd
man/grab.pyRAD.locus.Rd
man/lengths.report.Rd
man/locus.dist.Rd
man/match.lnL.to.trees.Rd
man/oak.rads.Rd
man/oak.tree.Rd
man/overlap.report.Rd
man/pairwise.fst.Rd
man/plot.locus.dist.Rd
man/plot.partitionedRAD.Rd
man/plot.rankedPartitionedRAD.Rd
man/print.pyRAD.loci.Rd
man/rad2mat.Rd
man/rad2nex.Rd
man/rad2phy.Rd
man/rank.partitionedRAD.Rd
man/read.pyRAD.Rd
man/rtreePhylo.Rd
man/subset.pyRAD.loci.Rd
man/summary.pyRAD.loci.Rd
man/tidyName.Rd
man/write.DNAStringSet.Rd
