get.raxml.siteLikelihoods: Read likelihoods from a RAxML_perSiteLLs file
In andrew-hipp/RADami: Phylogenetic Analysis of RADseq Data
View source: R/get.raxml.siteLikelihoods.R
get.raxml.siteLikelihoods R Documentation
Read likelihoods from a RAxML_perSiteLLs file
Description
This function is used to import likelihoods from a RAxML site likelihoods export.
Usage
get.raxml.siteLikelihoods(x)
Arguments
x
Filename of the RAxML_perSiteLLs file
Details
Not used in any downstream analyses currently in RADbuddy.
Value
A matrix with trees as rows, site lnL as columns
Author(s)
Andrew Hipp
See Also
get.raxml.treeLikelihoods,
match.lnL.to.trees
andrew-hipp/RADami documentation built on Nov. 9, 2023, 5:40 p.m.
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View source: R/get.raxml.siteLikelihoods.R
| get.raxml.siteLikelihoods | R Documentation |
Read likelihoods from a RAxML_perSiteLLs file
Description
This function is used to import likelihoods from a RAxML site likelihoods export.
Usage
get.raxml.siteLikelihoods(x)
Arguments
x |
Filename of the RAxML_perSiteLLs file |
Details
Not used in any downstream analyses currently in RADbuddy.
Value
A matrix with trees as rows, site lnL as columns
Author(s)
Andrew Hipp
See Also
get.raxml.treeLikelihoods,
match.lnL.to.trees
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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