RADami-package: Phylogenetic Analysis of RADseq Data
In andrew-hipp/RADami: Phylogenetic Analysis of RADseq Data
RADami-package R Documentation
Phylogenetic Analysis of RADseq Data
Description
This package implements import, export, manipulation, visualization, and downstream
(post-clustering) analysis of restriction-site associated DNA sequencing (RADseq) data,
integrating with the 'pyRAD' package by Deren Eaton.
It begins with output from the 'pyRAD' package by Deren Eataon (http://dereneaton.com/software; Eaton and Ree, 2013) and
implements many analyses conducted in a recent phylogenetic analysis of oaks (Hipp et al., accepted).
Details
Package: RADami
Type: Package
Version: 1.1-3
Date: 2018-08-17
License: GPL-3
Author(s)
Andrew Hipp
Maintainer: Andrew Hipp <ahipp@mortonarb.org>
References
Eaton D.A.R. & Ree R.H. (2013). Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae). Systematic Biolology 62: 689-706.
Hipp A.L., Eaton D.A.R., Cavender-Bares J., Fitzek E., Nipper R. & Manos P.S. 2014. A framework phylogeny of the American oak clade based on sequenced RAD data. PLoS ONE 9: e93975.
http://www.dereneaton.com/software/pyrad/
andrew-hipp/RADami documentation built on Nov. 9, 2023, 5:40 p.m.
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| RADami-package | R Documentation |
Phylogenetic Analysis of RADseq Data
Description
This package implements import, export, manipulation, visualization, and downstream (post-clustering) analysis of restriction-site associated DNA sequencing (RADseq) data, integrating with the 'pyRAD' package by Deren Eaton. It begins with output from the 'pyRAD' package by Deren Eataon (http://dereneaton.com/software; Eaton and Ree, 2013) and implements many analyses conducted in a recent phylogenetic analysis of oaks (Hipp et al., accepted).
Details
| Package: | RADami |
| Type: | Package |
| Version: | 1.1-3 |
| Date: | 2018-08-17 |
| License: | GPL-3 |
Author(s)
Andrew Hipp
Maintainer: Andrew Hipp <ahipp@mortonarb.org>
References
Eaton D.A.R. & Ree R.H. (2013). Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae). Systematic Biolology 62: 689-706.
Hipp A.L., Eaton D.A.R., Cavender-Bares J., Fitzek E., Nipper R. & Manos P.S. 2014. A framework phylogeny of the American oak clade based on sequenced RAD data. PLoS ONE 9: e93975. http://www.dereneaton.com/software/pyrad/
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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