compare.all.trees: Compare all trees in a treeset, and return a matrix (lower...

In andrew-hipp/RADami: Phylogenetic Analysis of RADseq Data

Compare all trees in a treeset, and return a matrix (lower diagonal only) indicating which pairwise comparisons are identical

Description

Compare all trees in a treeset, and return a matrix (lower diagonal only) indicating which pairwise comparisons are identical

Usage

compare.all.trees(treeset, ...)

Arguments

treeset	an object of class multiPhylo or a list of phylo objects
...	additional arguments to be passed along to all.equal.phylo

Details

Slow, tedious one-on-one comparison of trees, depending on the implementation in ape. As written, this function is sensitive to rooting.

Value

A matrix of TRUE and FALSE values depending on whether the compared trees are identical in topology

Author(s)

Andrew Hipp

See Also

link{unique.multiPhylo}

andrew-hipp/RADami documentation built on Nov. 9, 2023, 5:40 p.m.