grab.pyRAD.locus: Extract sequence data for one or a few loci

In andrew-hipp/RADami: Phylogenetic Analysis of RADseq Data

Extract sequence data for one or a few loci

Description

This function is pretty rudimentary and I've used it but little. As much as anything, it's a reminder for how to get sequence data out of a pyRAD.loci object.

Usage

grab.pyRAD.locus(pyDat, locName,
  dat.format = c("text", "fasta", "matrix"))

Arguments

pyDat	an object of class pyRAD.loci
locName	character name of the locus or loci you want
dat.format	currently takes text, fasta, or matrix, but the fasta format would still need to be written to a file

Value

A named character vector if dat.format is 'text' or 'fasta', otherwise a matrix

Author(s)

Andrew Hipp

andrew-hipp/RADami documentation built on Nov. 9, 2023, 5:40 p.m.