API for andrewparkermorgan/popcorn
File-Format Wrangler for Population-Based Genetic Data
| Global functions | |
|---|---|
| .fix_sex | Man page Source code |
| .flip.node | Source code |
| .get.dist.to.nmig | Source code |
| .get.f | Source code |
| .layout.treemix | Source code |
| .layout_agraph | Source code |
| .multilayout_agraph | Source code |
| .prep.layout | Man page Source code |
| .prep_fits | Source code |
| .set.mig.coords | Source code |
| .set.x.coord | Source code |
| .set.x.coords | Source code |
| .set.y.coord | Source code |
| .set.y.coords | Source code |
| .sort_indiv | Man page Source code |
| bootstrap_Q | Source code |
| filter_Dstats | Source code |
| focus_Dstats | Source code |
| focus_f3stats | Source code |
| focus_f4stats | Source code |
| get_Dstats | Source code |
| get_pca_palette | Source code |
| glance | Source code |
| glance.agraph_fit | Source code |
| make_ibd_matrix | Source code |
| melt_pc_pairs | Source code |
| merge_pca_result | Source code |
| myldply | Man page Source code |
| pc_label | Source code |
| pca_plink | Man page Source code |
| pca_vcf | Man page Source code |
| plot_admixture | Man page Source code |
| plot_admixture_labelled | Man page Source code |
| plot_agraph | Source code |
| plot_fitted | Source code |
| plot_treemix | Man page Source code |
| read_Dstats | Source code |
| read_Fst_matrix | Source code |
| read_Q_bootstraps | Source code |
| read_Q_matrix | Man page Source code |
| read_beagle_ibd | Man page Source code |
| read_bed | Man page Source code |
| read_blat_psl | Source code |
| read_coverage | Man page Source code |
| read_f3stats | Source code |
| read_f4stats | Source code |
| read_fam | Man page Source code |
| read_freq_plink | Source code |
| read_freq_plink2 | Source code |
| read_geno_summary_plink2 | Source code |
| read_het_plink | Man page Source code |
| read_het_plink2 | Source code |
| read_homozyg_plink | Man page Source code |
| read_ibdne_result | Source code |
| read_loglik_files | Man page Source code |
| read_map | Man page Source code |
| read_missing_plink2 | Source code |
| read_missingness_plink | Source code |
| read_pca_plink | Source code |
| read_pca_result | Source code |
| read_psmc_result | Source code |
| read_refinedIBD | Source code |
| read_roh | Man page Source code |
| read_treemix | Man page Source code |
| repeat_colours | Source code |
| repeat_shapes | Source code |
| scale_combo | Man page Source code |
| scale_shape_repeater | Man page Source code |
| sort_by_cluster | Man page Source code |
| sort_f4stats | Source code |
| theme_admixture | Man page Source code |
| theme_nice | Man page Source code |
| theme_slanty_x | Man page Source code |
| theme_treemix | Man page Source code |
| tidy | Man page Source code |
| tidy.admixture_Q | Source code |
| tidy.agraph_fit | Source code |
| update_fam_file | Source code |
| var_explained | Source code |
| vcf_kinship | Source code |
| write_bed | Source code |
| write_fam | Source code |
| write_pca_result | Source code |
