API for andrewparkermorgan/popcorn
File-Format Wrangler for Population-Based Genetic Data

Global functions
.fix_sex Man page Source code
.flip.node Source code
.get.dist.to.nmig Source code
.get.f Source code
.layout.treemix Source code
.layout_agraph Source code
.multilayout_agraph Source code
.prep.layout Man page Source code
.prep_fits Source code
.set.mig.coords Source code
.set.x.coord Source code
.set.x.coords Source code
.set.y.coord Source code
.set.y.coords Source code
.sort_indiv Man page Source code
bootstrap_Q Source code
filter_Dstats Source code
focus_Dstats Source code
focus_f3stats Source code
focus_f4stats Source code
get_Dstats Source code
get_pca_palette Source code
glance Source code
glance.agraph_fit Source code
make_ibd_matrix Source code
melt_pc_pairs Source code
merge_pca_result Source code
myldply Man page Source code
pc_label Source code
pca_vcf Man page Source code
plot_admixture Man page Source code
plot_agraph Source code
plot_fitted Source code
plot_treemix Man page Source code
read_Dstats Source code
read_Fst_matrix Source code
read_Q_bootstraps Source code
read_Q_matrix Man page Source code
read_beagle_ibd Man page Source code
read_bed Man page Source code
read_blat_psl Source code
read_coverage Man page Source code
read_f3stats Source code
read_f4stats Source code
read_fam Man page Source code
read_freq_plink Source code
read_het_plink Man page Source code
read_homozyg_plink Man page Source code
read_ibdne_result Source code
read_loglik_files Man page Source code
read_map Man page Source code
read_missingness_plink Source code
read_pca_result Source code
read_psmc_result Source code
read_refinedIBD Source code
read_roh Man page Source code
read_treemix Man page Source code
scale_combo Man page Source code
scale_shape_repeater Man page Source code
sort_by_cluster Man page Source code
sort_f4stats Source code
theme_admixture Man page Source code
theme_nice Man page Source code
theme_slanty_x Man page Source code
theme_treemix Man page Source code
tidy Man page Source code
tidy.admixture_Q Source code
tidy.agraph_fit Source code
update_fam_file Source code
var_explained Source code
vcf_kinship Source code
write_bed Source code
write_fam Source code
write_pca_result Source code
andrewparkermorgan/popcorn documentation built on May 25, 2019, 2:25 p.m.