plot_treemix: Plot population tree

In andrewparkermorgan/popcorn: File-Format Wrangler for Population-Based Genetic Data

Plot population tree

Description

Plot population tree

Usage

plot_treemix(
  obj,
  plot.nodes = TRUE,
  plot.migration = TRUE,
  branch.colour = "grey",
  branch.width = 0.5,
  label = TRUE,
  ...
)

Arguments

obj	pieces of a TreeMix run from read_treemix()
plot.nodes	show dots for internal and leaf nodes of population tree
plot.migration	show migration edges as curved arrows
branch.colour	colour to use when drawing edges of population tree
branch.width	weight of drift edges of population tree

Value

A ggplot2 plot, with dataframes fo tips and edges of tree returned as attributes attr(,"tips") and attr(,"edges") respectively

andrewparkermorgan/popcorn documentation built on July 8, 2023, 12:42 p.m.