Files in andygxzeng/ECSI
Espresso - Somatic Mutation Calling using Contextual Error Models
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
Espresso.Rproj
LICENSE
NAMESPACE
R/annotate_MAF.R
R/annotate_variants.R
R/call_all_variants.R
R/call_variants.R
R/correct_pvalues.R
R/filter_MAPQ.R
R/filter_model_input.R
R/flag_alleles.R
R/generate_all_models.R
R/generate_model.R
R/get_flagged_alleles.R
R/intersect_VRanges.R
R/load_as_VRanges.R
R/load_bed.R
R/load_recurrent_mutations.R
R/sequence_context.R
R/subtract_VRanges.R
README.md
man/annotate_MAF.Rd
man/annotate_variants.Rd
man/call_all_variants.Rd
man/call_variants.Rd
man/correct_pvalues.Rd
man/filter_MAPQ.Rd
man/filter_model_input.Rd
man/flag_alleles.Rd
man/generate_all_models.Rd
man/generate_model.Rd
man/get_flagged_alleles.Rd
man/intersect_VRanges.Rd
man/load_as_VRanges.Rd
man/load_bed.Rd
man/load_recurrent_mutations.Rd
man/sequence_context.Rd
man/subtract_VRanges.Rd
vignettes/.gitignore
vignettes/Espresso_vignette.Rmd
vignettes/Espresso_workflow.Rmd
vignettes/Espresso_workflow.html
