intersect_VRanges: Intersect VRanges objects
In andygxzeng/ECSI: Espresso - Somatic Mutation Calling using Contextual Error Models
Description
Usage
Arguments
Value
Examples
View source: R/intersect_VRanges.R
Description
Identifies features from B that overlap with A, removes the overlapping features from A and returns the remaining portion of A. If both A and B are VRanges objects, then this function is allele specific.
Usage
1
intersect_VRanges(A, B)
Arguments
A
VRanges object to filter from and return
B
VRanges or GRanges object with alleles to keep
Value
This function returns VRanges object A retaining only the alleles that overlap with VRanges object B.
Examples
1
2
3
4
## Not run:
variants <- intersect_VRanges(A = variants, B = positions_of_interest)
## End(Not run)
andygxzeng/ECSI documentation built on Feb. 6, 2021, 8:53 a.m.
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Description Usage Arguments Value Examples
View source: R/intersect_VRanges.R
Description
Identifies features from B that overlap with A, removes the overlapping features from A and returns the remaining portion of A. If both A and B are VRanges objects, then this function is allele specific.
Usage
1 | intersect_VRanges(A, B)
|
Arguments
A |
|
B |
|
Value
This function returns VRanges object A retaining only the alleles that overlap with VRanges object B.
Examples
1 2 3 4 | ## Not run:
variants <- intersect_VRanges(A = variants, B = positions_of_interest)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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