load_bed: Load Bed File as GRanges

In andygxzeng/ECSI: Espresso - Somatic Mutation Calling using Contextual Error Models

Description

Loads in sequence ranges from bed file and presents it as a GRanges object. Can handle headers and different Chr naming conventions.

Usage

load_bed(file, genome = c("hg19", "hg38"))

Arguments

file	Location of bed file
genome	Reference genome to use, default is hg19

Value

This function returns a GRanges object including:

• seqnames

• ranges

Examples

## Not run: 
regions_of_interest <- load_bed(file = "AML_exons.bed", genome = "hg19")

## End(Not run)

andygxzeng/ECSI documentation built on Feb. 6, 2021, 8:53 a.m.