Man pages for andygxzeng/ECSI
Espresso - Somatic Mutation Calling using Contextual Error Models
| annotate_MAF | Annotate MAF |
| annotate_variants | Annotate Variants |
| call_all_variants | Call All Variants |
| call_variants | Call Variants |
| correct_pvalues | p-value correction |
| filter_MAPQ | Filter MAPQ |
| filter_model_input | Filter Model Input |
| flag_alleles | Flag Alleles |
| generate_all_models | Generate All Models |
| generate_model | Generate Model |
| get_flagged_alleles | Get Flagged Alleles |
| intersect_VRanges | Intersect VRanges objects |
| load_as_VRanges | Load as VRanges |
| load_bed | Load Bed File as GRanges |
| load_recurrent_mutations | Load File with Recurrent Mutations to exclude |
| sequence_context | Sequence Context |
| subtract_VRanges | Subtract VRanges objects |
