nodelist_from_logFC: Create nodelist from logFC dataframe

In anschue/toxprofileR: Functions for Retrieving Dynamic Toxicogenomic Fingerprints

Description

Create nodelist from logFC dataframe

Usage

nodelist_from_logFC(logFCframe, nodeframe, substance = "substance",
  time_hpe = 1, concentration_umol_l = 1, concentration_level = "C1",
  time_hpe_factor = 1)

Arguments

logFCframe	a dataframe containing the columns 'logFC' and 'ensembl_gene_id'
nodeframe	universe nodeframe
substance	name of substance
time_hpe	time after exposure
concentration_umol_l	concentration
concentration_level	concentration level
time_hpe_factor	time after exposure

Value

returns a nodelist

anschue/toxprofileR documentation built on Nov. 2, 2019, 1:55 p.m.