plot_portrait_grid: Plot portrait grid

In anschue/toxprofileR: Functions for Retrieving Dynamic Toxicogenomic Fingerprints

Description

Plot portrait grid

Usage

plot_portrait_grid(nodelist, filename, tox_universe = NULL,
  grid = NULL, tcta_paramframe = NULL, substance = NULL,
  type = c("code", "median", "modeled"), parameter = NULL,
  onlysig = c(TRUE, FALSE), colvec = NULL)

Arguments

nodelist	A nodelist created with toxprofileR::create_nodelist()
filename	filename to save plot
tox_universe	Toxicogenomic universe
grid	grid of toxicogenomic universe
tcta_paramframe	Optional, dataframe containing fitted parameter values for each node
substance	Optional, substance name
type	character string, type of response to be plotted; Possible values are "code", "median", "modeled", "parameter"
parameter	Optional, name of parameter to be plotted
onlysig	logical, if reponse should be filtered to signficant values
colvec	custom scaling for color scale

Value

Saves a fingerprint grid in the given filename

anschue/toxprofileR documentation built on Nov. 2, 2019, 1:55 p.m.