plot_portrait: Plot Tox Portrait

In anschue/toxprofileR: Functions for Retrieving Dynamic Toxicogenomic Fingerprints

Description

Plot Tox Portrait

Usage

plot_portrait(nodelist, tox_universe = NULL, grid = NULL,
  tcta_paramframe = NULL, substance = NULL, time_hpe,
  concentration_level, concentration_umol_l = NULL, type = c("code",
  "median", "modeled", "parameter", "animated"), parameter = NULL,
  onlysig = c(TRUE, FALSE), siglevel = NULL, CIdiff = NULL,
  output = c("plot", "data"), legend = FALSE, logy = FALSE,
  colvec = NULL, maxSmax = NULL)

Arguments

nodelist	A nodelist created with toxprofileR::create_nodelist()
tox_universe	Toxicogenomic universe
grid	grid of toxicogenomic universe
tcta_paramframe	Optional, dataframe containing fitted parameter values for each node
substance	Optional, substance name
time_hpe	Time point to be plotted
concentration_level	Concentration level to be plotted
concentration_umol_l	concentration for prediction
type	character string, type of response to be plotted; Possible values are "code", "median", "modeled", "parameter"
parameter	Optional, name of parameter to be plotted
onlysig	logical, if reponse should be filtered to signficant values
siglevel	vector of significant effect levels
CIdiff	CIdiff
output	character string, if the output should be plotted ("plot") or plot data should be given as output ("data")
legend	logical, should a legend be given out (default: F)
logy	logical should parameter value be log-scaled
colvec	custom vector for colorscale
maxSmax	maxSmax

Value

either a ggplot printed or ggplot data, depending on the parameter "output"

anschue/toxprofileR documentation built on Nov. 2, 2019, 1:55 p.m.